goalie 0.3.0 (2019-07-29)
Version bump, reflecting start of a new release series.
hasValidNames against invalid objects that don’t return either a value or
NULL. This can happen in rare cases with invalid SummarizedExperiment objects (e.g.
bcb_invalid object in bcbioRNASeq tests).
goalie 0.3.1 (2019-08-05)
- Improved documentation consistency, using shared params defined in new AcidRoxygen package. This will be used across the basejump packages in a forthcoming update.
goalie 0.3.2 (2019-08-10)
- Now exporting
toNames, which was previously used internally by the package. Improved handling in this function for floating points. Also now using
toNames more consistently internally to sanitize names for
standardizeCall: Now returns with default arguments included. Can disable using
defaults = FALSE.
matchArgsToDoCall: Tweaked internal code slightly based on
- Updated messages to use quotes more consistently.
- Improved vector name handling for
goalie 0.3.3 (2019-08-11)
validNames: Bug fix and improvement for function, clearly showing position where names are invalid.
goalie 0.3.4 (2019-08-12)
hasSubset: New functions that were previously used internally in basejump. Requires S4Vectors / SummarizedExperiment.
goalie 0.3.5 (2019-08-13)
isURL now returns true on
url class input.
- Improved message consistency.
goalie 0.3.6 (2019-08-27)
Updated R dependency to 3.6.
appendToBody: Now allowing pass-in of multiple values as a
list. The list must contains
hasNonzeroRowsAndCols: Renamed function, improving consistency with generic defined in bioverbs. Also added support for
DelayedMatrix, improving consistency with basejump
goalie 0.3.7 (2019-09-06)
hasInternet: Now allowing a user to check a specific URL, using the
url argument. Currently defaults to Bioconductor.
goalie 0.3.8 (2019-09-15)
aes argument to support American “color” pass-in in addition to British “colour” spelling.
- Switched to consistent use of “color” instead of “colour” in documentation, working examples, and unit tests.
goalie 0.3.9 (2019-10-04)
nElements: Return the number of elements in an object. Previously this was defined internally in the package but is generally useful.
hasElements: No longer requiring the
n argument. The function now performs similarly to
isNonEmpty are now soft deprecated.
isEmpty is defined in the Bioconductor S4Vectors package, and we don’t want to mask in interactive scripting sessions.
is2: No longer exported, since this function isn’t really intended for use outside of the package. Refer to
isAny checks instead.
goalie 0.3.10 (2019-10-10)
toNames: Bug fix for
na.omit return causing assert check to fail because class returns
is.vector check but
isIntegerish now returns logical vector for
na.omit return. This supports
isInt check functions.
goalie 0.3.11 (2019-10-18)
- Improved consistency of scalar and vector print messages.
goalie 0.3.12 (2019-10-21)
isFileSystemCaseSensitive: Checks whether file system is case sensitive (
TRUE) or insensitive (
FALSE). Linux tends to default to case sensitive, where as macOS and Windows default to case insensitive. Note that case insensitive file systems can lead to issues with Git repos. This check will be incorporated into a new
rename mode for syntactic naming functions in a future release.